Ligand-receptor Interactions by NMR Spectroscopy

Tepeš, Predrag and Novak, Predrag (2008) Ligand-receptor Interactions by NMR Spectroscopy. Kemija u industriji, 57 (4). pp. 165-173. ISSN 0022-9830

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Abstract

Today NMR spectroscopy is a method of choice for elucidation of interactions between biomolecules and the potential ligands. Knowledge on these interactions is an essential prerequisite for the rational drug design. The most important contribution of NMR to drug design a few years ago was the 3D structure determination of proteins. Besides delivering the 3D structures of the free proteins as a raw material for the modeling studies on ligand binding, NMR can directly yield valuable experimental data on the biologically important protein-ligand complexes. In addition to X-ray diffraction, NMR spectroscopy can provide information on the internal protein dynamics or dynamics of intermolecular interactions. Changes in NMR parameters allow us to detect ("SAR by NMR") and quantitatively determine binding affinities (titration, diffusion NMR experiments, etc.) of potential ligands. Also, it is possible to determine the binding site and conformations of ligands, receptors and receptor-ligand complexes with the help of NMR methods such as tr-NOESY. Epitopes or functional groups responsible for binding of ligands to the receptor can be identified by employing STD or WaterLOGSY experiments. In this review are described some of the most frequent NMR methods for the characterization of the interactions between biomolecules and ligands, together with their advantages and disadvantages.

Item Type: Article
Keywords: nuclear magnetic resonance; receptor; protein-ligand complexes
Date: 2008
Subjects: NATURAL SCIENCES > Chemistry
Divisions: Faculty of Science > Department of Chemistry
Publisher: Hrvatsko društvo kemijskih inženjera i tehnologa
Related URLs:
Depositing User: mag. bibl. Ana Šafran
Date Deposited: 29 May 2014 12:36
Last Modified: 29 May 2014 12:36
URI: http://digre.pmf.unizg.hr/id/eprint/1954

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