Lokalno poravnanje i prepoznavanje motiva

Medved, Antonija (2016) Lokalno poravnanje i prepoznavanje motiva. Diploma thesis, Faculty of Science > Department of Mathematics.

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Abstract

In this paper, we are concerned with optimization of iterative motif scanning. To be specific, we want to reduce processing time of finding the closest match to a given motif in each sequence of given proteome. First, we describe the scoring model and comment distribution of best score in each sequence. Then we improve the model by indexing the proteome and generating a vector that represents the number of positions at which the corresponding symbols are equal between two sequences. Finally, we have seen that this model gives very good results when applied on real-life plant proteome.

Item Type: Thesis (Diploma thesis)
Supervisor: Goldstein, Pavle
Date: 2016
Number of Pages: 23
Subjects: NATURAL SCIENCES > Mathematics
Divisions: Faculty of Science > Department of Mathematics
Depositing User: Iva Prah
Date Deposited: 03 Nov 2016 09:33
Last Modified: 03 Nov 2016 09:33
URI: http://digre.pmf.unizg.hr/id/eprint/5254

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